Degenerate Primer PCR
- Try to be not too degenerate, ² 65000 possibilities.
- Use Inosine to represent N, where all 4 residues are present
EXCEPT for last 4 residues on 3 end of primer
- Increase primer concentration by 10 to 20 fold
- Increase annealing time from 0:15 to ~0:45 or more
- Make control reactions with only 1 primer
- enjoy a if it works