Southern Blotting using Stratagene's PosiBlot
Dominik Haudenschild, September 1, 1998
For gels at most 1% agarose, about 0.7cm thick
Depurination:
-soak gels in 0.25N HCl for 20 minutes with gentle shaking (4.1ml HCl in 200ml water)
-the bromophenol blue dye should turn green with HCl treatment
Denatureation:
-soak gel in 0.5N NaOH / 1.5M NaCl for 30 to 45 min, shaking (10ml 10N NaOH, 17g NaCl)
-the bromophenol blue should once again turn blue
Neutralization:
-soak gel in 1M Tris pH 7.5 / 1.5M NaCl for 30 to 45 minutes
Assemble in PosiBlot apparatus as in Stratagene's instructions
Blot for 30 to 60 minutes at 75mm Hg pressure
UV crosslink the DNA onto membrane using Stratalinker on AutoCrosslink setting